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RNACocktail A comprehensive framework for accurate and efficient RNA-Seq analysisThe RNACocktail pipeline is composed of a high-accuracy tools for different steps of RNA-Seq analysis. It performs a broad spectrum RNA-Seq analysis on both short- and long-read technologies to enable meaningful insights from transcriptomic data. It was developed after analyzing a variety of RNA-Seq samples (ranging from germline, cancer to stem cell datasets) and technologies using a multitude of tool combinations to determine a pipeline which is comprehensive, fast and accurate.RNACocktail supports:short-readlong-readalignmenterror correctiontranscriptome reconstructionalignmentdenovo transcriptome assemblytranscriptome reconstructionalignment-free quantificationfusion predictiondifferential expression analysisfusion predictionvariant callingRNA editing prediction. If you use RNACocktail in your work, please cite the following:Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Robert Sebra, Hagen Tilgner,Pegah T. Afshar, Kin Fai Au, Narges Bani Asadi, Mark B.
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January 2023
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