RNACocktail A comprehensive framework for accurate and efficient RNA-Seq analysisThe RNACocktail pipeline is composed of a high-accuracy tools for different steps of RNA-Seq analysis. It performs a broad spectrum RNA-Seq analysis on both short- and long-read technologies to enable meaningful insights from transcriptomic data. It was developed after analyzing a variety of RNA-Seq samples (ranging from germline, cancer to stem cell datasets) and technologies using a multitude of tool combinations to determine a pipeline which is comprehensive, fast and accurate.RNACocktail supports:short-readlong-readalignmenterror correctiontranscriptome reconstructionalignmentdenovo transcriptome assemblytranscriptome reconstructionalignment-free quantificationfusion predictiondifferential expression analysisfusion predictionvariant callingRNA editing prediction. If you use RNACocktail in your work, please cite the following:Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Robert Sebra, Hagen Tilgner,Pegah T. Afshar, Kin Fai Au, Narges Bani Asadi, Mark B.
Gerstein, Wing Hung Wong,Michael P. Snyder, Eric Schadt, and Hugo Y. LamGaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysisNature Communications 8, Article number: 59 (2017).Download RNACocktailLatest version:For other versions, see 'releases'. RNACocktail Docker ImageThe docker image with all the packages installed can be found atOlder docker images (versions 30.0' -filter-name QD -filter 'QD 30.0' -filter-name QD -filter 'QD.
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